PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2604_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 379aa    MW: 41790.8 Da    PI: 6.3882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2604_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08270317455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  RrC2604_p3 270 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 317
                 8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9264321No hitNo description
Gene3DG3DSA:4.10.280.103.5E-16266331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-6270317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDNELFMNTE LPPPPEMAVH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ  60
QQSIFDSALS SLVSSPTPSN SNYSGGDGFI IRELIGKLGN IGNTSGDIYG APMNSNSRSA  120
SCYATPMSSP PPMMSRTAPL TEFSGDPGFA ERAAKFSCFG SRSFNGRTNS GLPVNNNNGG  180
KIASSGKRRL SRPLLLRRKS KETPLPAAAS PSPSLSKTAE RKDEEEKGGK RRREEEGDEE  240
EGNKGNDTKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KIGERMKLLQ DLVPGCNKVT  300
GKALMLDEII NYVQSLQRQV EFLSMKLSSV NDTRLEFNVD ALVSKDAYQL FSEEDLQSIV  360
GMGMAHNPNH ESQNMKIEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-132AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-132BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-132BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644315.10.0PREDICTED: transcription factor bHLH78-like isoform X2
SwissprotQ9FJL41e-161BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0D3DBT10.0A0A0D3DBT1_BRAOL; Uncharacterized protein
STRINGBra037478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.17e-64bHLH family protein